PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g027190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 92aa    MW: 10443.7 Da    PI: 8.5287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g027190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-1020601454
                      HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      d+iN+  ++L++llP++ + +s K+s + +L+ +++YIksL
  Sopen06g027190.1 20 DQINDLVNKLQQLLPELRNRSSDKVSASRVLQDTCNYIKSL 60
                      79**************8799********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.896660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-102076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-72060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-102079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0010086Biological Processembryonic root morphogenesis
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSSR HSGGSRISED QINDLVNKLQ QLLPELRNRS SDKVSASRVL QDTCNYIKSL  60
HREVDDLSDR LSELLESSDT TQAALIRSLL MQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754455e-79HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241574.15e-58PREDICTED: transcription factor PRE3
RefseqXP_006354787.15e-58PREDICTED: transcription factor PRE3-like
RefseqXP_015078920.15e-58PREDICTED: transcription factor PRE3-like
SwissprotQ9CA648e-38PRE3_ARATH; Transcription factor PRE3
TrEMBLK4C8G45e-58K4C8G4_SOLLC; Uncharacterized protein
STRINGSolyc06g070910.2.12e-57(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.16e-27activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1